Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix
Identifieur interne : 000480 ( Main/Exploration ); précédent : 000479; suivant : 000481Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix
Auteurs : Leonor Guerra-Guimarães [Portugal] ; Rita Tenente [Portugal] ; Carla Pinheiro [Portugal] ; Inês Chaves [Portugal] ; Maria Do Céu Silva [Portugal] ; Fernando M. H. Cardoso [Portugal] ; Sébastien Planchon [Luxembourg (pays)] ; Danielle R. Barros [Portugal, Brésil] ; Jenny Renaut [Luxembourg (pays)] ; Cândido P. Ricardo [Portugal]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2015.
Abstract
A proteomic analysis of the apoplastic fluid (APF) of coffee leaves was conducted to investigate the cellular processes associated with incompatible (resistant) and compatible (susceptible)
Url:
DOI: 10.3389/fpls.2015.00478
PubMed: 26175744
PubMed Central: 4484983
Affiliations:
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Ricardo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (UNL)</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26175744</idno><idno type="pmc">4484983</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484983</idno><idno type="RBID">PMC:4484983</idno><idno type="doi">10.3389/fpls.2015.00478</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000071</idno><idno type="wicri:Area/Pmc/Curation">000071</idno><idno type="wicri:Area/Pmc/Checkpoint">000373</idno><idno type="wicri:Area/Ncbi/Merge">001C16</idno><idno type="wicri:Area/Ncbi/Curation">001C16</idno><idno type="wicri:Area/Ncbi/Checkpoint">001C16</idno><idno type="wicri:Area/Main/Merge">000480</idno><idno type="wicri:Area/Main/Curation">000480</idno><idno type="wicri:Area/Main/Exploration">000480</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Proteomic analysis of apoplastic fluid of <italic>Coffea arabica</italic> leaves highlights novel biomarkers for resistance against <italic>Hemileia vastatrix</italic></title><author><name sortKey="Guerra Guimaraes, Leonor" sort="Guerra Guimaraes, Leonor" uniqKey="Guerra Guimaraes L" first="Leonor" last="Guerra-Guimarães">Leonor Guerra-Guimarães</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Centro de Investigação das Ferrugens do Cafeeiro, Instituto de Investigação Científica Tropical</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa</institution><country>Lisboa, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Tenente, Rita" sort="Tenente, Rita" uniqKey="Tenente R" first="Rita" last="Tenente">Rita Tenente</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Centro de Investigação das Ferrugens do Cafeeiro, Instituto de Investigação Científica Tropical</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Pinheiro, Carla" sort="Pinheiro, Carla" uniqKey="Pinheiro C" first="Carla" last="Pinheiro">Carla Pinheiro</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (UNL)</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff4"><institution>Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa</institution><country>Caparica, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Chaves, Ines" sort="Chaves, Ines" uniqKey="Chaves I" first="Inês" last="Chaves">Inês Chaves</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (UNL)</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff5"><institution>Instituto de Biologia Experimental e Tecnológica</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Silva, Maria Do Ceu" sort="Silva, Maria Do Ceu" uniqKey="Silva M" first="Maria Do Céu" last="Silva">Maria Do Céu Silva</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Centro de Investigação das Ferrugens do Cafeeiro, Instituto de Investigação Científica Tropical</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff2"><institution>Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa</institution><country>Lisboa, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Cardoso, Fernando M H" sort="Cardoso, Fernando M H" uniqKey="Cardoso F" first="Fernando M. H." last="Cardoso">Fernando M. H. Cardoso</name><affiliation wicri:level="1"><nlm:aff id="aff6"><institution>Global Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa</institution><country>Lisboa, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Planchon, Sebastien" sort="Planchon, Sebastien" uniqKey="Planchon S" first="Sébastien" last="Planchon">Sébastien Planchon</name><affiliation wicri:level="1"><nlm:aff id="aff7"><institution>Luxembourg Institute of Science and Technology</institution><country>Belvaux, Luxembourg</country></nlm:aff><country xml:lang="fr">Luxembourg (pays)</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Barros, Danielle R" sort="Barros, Danielle R" uniqKey="Barros D" first="Danielle R." last="Barros">Danielle R. Barros</name><affiliation wicri:level="1"><nlm:aff id="aff1"><institution>Centro de Investigação das Ferrugens do Cafeeiro, Instituto de Investigação Científica Tropical</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff8"><institution>Department de Fitossanidade, Universidade Federal de Pelotas</institution><country>Pelotas, Brasil</country></nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Renaut, Jenny" sort="Renaut, Jenny" uniqKey="Renaut J" first="Jenny" last="Renaut">Jenny Renaut</name><affiliation wicri:level="1"><nlm:aff id="aff7"><institution>Luxembourg Institute of Science and Technology</institution><country>Belvaux, Luxembourg</country></nlm:aff><country xml:lang="fr">Luxembourg (pays)</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Ricardo, Candido P" sort="Ricardo, Candido P" uniqKey="Ricardo C" first="Cândido P." last="Ricardo">Cândido P. Ricardo</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa (UNL)</institution><country>Oeiras, Portugal</country></nlm:aff><country xml:lang="fr">Portugal</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>A proteomic analysis of the apoplastic fluid (APF) of coffee leaves was conducted to investigate the cellular processes associated with incompatible (resistant) and compatible (susceptible) <italic>Coffea arabica</italic>-<italic>Hemileia vastatrix</italic> interactions, during the 24–96 hai period. The APF proteins were extracted by leaf vacuum infiltration and protein profiles were obtained by 2-DE. The comparative analysis of the gels revealed 210 polypeptide spots whose volume changed in abundance between samples (control, resistant and susceptible) during the 24–96 hai period. The proteins identified were involved mainly in protein degradation, cell wall metabolism and stress/defense responses, most of them being hydrolases (around 70%), particularly sugar hydrolases and peptidases/proteases. The changes in the APF proteome along the infection process revealed two distinct phases of defense responses, an initial/basal one (24–48 hai) and a late/specific one (72–96 hai). Compared to susceptibility, resistance was associated with a higher number of proteins, which was more evident in the late/specific phase. Proteins involved in the resistance response were mainly, glycohydrolases of the cell wall, serine proteases and pathogen related-like proteins (PR-proteins), suggesting that some of these proteins could be putative candidates for resistant markers of coffee to <italic>H. vastatrix</italic>. Antibodies were produced against chitinase, pectin methylesterase, serine carboxypeptidase, reticuline oxidase and subtilase and by an immunodetection assay it was observed an increase of these proteins in the resistant sample. With this methodology we have identified proteins that are candidate markers of resistance and that will be useful in coffee breeding programs to assist in the selection of cultivars with resistance to <italic>H. vastatrix</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Abril, N" uniqKey="Abril N">N. Abril</name></author><author><name sortKey="Gion, J M" uniqKey="Gion J">J.-M. 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Fernandez</name></author><author><name sortKey="Petitot, A S" uniqKey="Petitot A">A. S. Petitot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vartapetian, A" uniqKey="Vartapetian A">A. Vartapetian</name></author><author><name sortKey="Tuzhikov, A" uniqKey="Tuzhikov A">A. Tuzhikov</name></author><author><name sortKey="Chichkova, N" uniqKey="Chichkova N">N. Chichkova</name></author><author><name sortKey="Taliansky, M" uniqKey="Taliansky M">M. Taliansky</name></author><author><name sortKey="Wolpert, T" uniqKey="Wolpert T">T. Wolpert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Varzea, V M P" uniqKey="Varzea V">V. M. P. Várzea</name></author><author><name sortKey="Marques, D V" uniqKey="Marques D">D. V. Marques</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Voegele, R T" uniqKey="Voegele R">R. T. Voegele</name></author><author><name sortKey="Mendgen, K" uniqKey="Mendgen K">K. Mendgen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, Q" uniqKey="Zhu Q">Q. Zhu</name></author><author><name sortKey="Maher, E A" uniqKey="Maher E">E. A. Maher</name></author><author><name sortKey="Masoud, S" uniqKey="Masoud S">S. Masoud</name></author><author><name sortKey="Dixon, R A" uniqKey="Dixon R">R. A. Dixon</name></author><author><name sortKey="Lamb, C J" uniqKey="Lamb C">C. J. Lamb</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Brésil</li><li>Luxembourg (pays)</li><li>Portugal</li></country></list><tree><country name="Portugal"><noRegion><name sortKey="Guerra Guimaraes, Leonor" sort="Guerra Guimaraes, Leonor" uniqKey="Guerra Guimaraes L" first="Leonor" last="Guerra-Guimarães">Leonor Guerra-Guimarães</name></noRegion><name sortKey="Barros, Danielle R" sort="Barros, Danielle R" uniqKey="Barros D" first="Danielle R." last="Barros">Danielle R. Barros</name><name sortKey="Cardoso, Fernando M H" sort="Cardoso, Fernando M H" uniqKey="Cardoso F" first="Fernando M. H." last="Cardoso">Fernando M. H. Cardoso</name><name sortKey="Chaves, Ines" sort="Chaves, Ines" uniqKey="Chaves I" first="Inês" last="Chaves">Inês Chaves</name><name sortKey="Chaves, Ines" sort="Chaves, Ines" uniqKey="Chaves I" first="Inês" last="Chaves">Inês Chaves</name><name sortKey="Guerra Guimaraes, Leonor" sort="Guerra Guimaraes, Leonor" uniqKey="Guerra Guimaraes L" first="Leonor" last="Guerra-Guimarães">Leonor Guerra-Guimarães</name><name sortKey="Pinheiro, Carla" sort="Pinheiro, Carla" uniqKey="Pinheiro C" first="Carla" last="Pinheiro">Carla Pinheiro</name><name sortKey="Pinheiro, Carla" sort="Pinheiro, Carla" uniqKey="Pinheiro C" first="Carla" last="Pinheiro">Carla Pinheiro</name><name sortKey="Ricardo, Candido P" sort="Ricardo, Candido P" uniqKey="Ricardo C" first="Cândido P." last="Ricardo">Cândido P. Ricardo</name><name sortKey="Silva, Maria Do Ceu" sort="Silva, Maria Do Ceu" uniqKey="Silva M" first="Maria Do Céu" last="Silva">Maria Do Céu Silva</name><name sortKey="Silva, Maria Do Ceu" sort="Silva, Maria Do Ceu" uniqKey="Silva M" first="Maria Do Céu" last="Silva">Maria Do Céu Silva</name><name sortKey="Tenente, Rita" sort="Tenente, Rita" uniqKey="Tenente R" first="Rita" last="Tenente">Rita Tenente</name></country><country name="Luxembourg (pays)"><noRegion><name sortKey="Planchon, Sebastien" sort="Planchon, Sebastien" uniqKey="Planchon S" first="Sébastien" last="Planchon">Sébastien Planchon</name></noRegion><name sortKey="Renaut, Jenny" sort="Renaut, Jenny" uniqKey="Renaut J" first="Jenny" last="Renaut">Jenny Renaut</name></country><country name="Brésil"><noRegion><name sortKey="Barros, Danielle R" sort="Barros, Danielle R" uniqKey="Barros D" first="Danielle R." last="Barros">Danielle R. Barros</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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